Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs4843778 chr16:88076882 G/A 0.000116 484 30.08 31.92 21.17 KM Plot
PRAD rs4847425 chr1:93874086 T/A 6.66E-16 489 16.82 28.3 31.37 KM Plot
PRAD rs4861701 chr4:187061721 A/G 1.34E-6 491 28.07 28.22 31.2 KM Plot
PRAD rs4861702 chr4:187064561 T/C 3.31E-7 486 28.33 29.25 31.27 KM Plot
PRAD rs4861703 chr4:187064873 T/C 1.39E-5 486 32.4 28.3 31.27 KM Plot
PRAD rs4862646 chr4:187069090 C/A 9.69E-7 472 28.33 28.22 31.2 KM Plot
PRAD rs4868158 chr5:171738453 G/C 2.64E-5 486 28.63 33.07 28.65 KM Plot
PRAD rs487529 chr1:22055855 T/C 6.43E-5 489 30.78 32.62 20.93 KM Plot
PRAD rs488420 chr8:104008940 A/T 0.000176 489 31.27 28.67 16.58 KM Plot
PRAD rs489183 chr1:93592692 A/T 1.15E-8 492 31.37 25.98 9.17 KM Plot
PRAD rs4908868 chr1:6287543 C/G 0.000147 487 30.8 32 24.2 KM Plot
PRAD rs492701 chr8:103998000 G/A 2.0E-12 490 31.23 29.08 4.87 KM Plot
PRAD rs4949203 chr1:31781279 C/T 2.48E-5 494 22.87 31.33 30.93 KM Plot
PRAD rs4949388 chr1:31806729 A/T 8.25E-6 494 22.87 31.28 30.93 KM Plot
PRAD rs4963032 chr11:1375716 G/A 1.44E-6 485 31.3 26.23 61.83 KM Plot